For the most up-to-date information about NeuroDataRehack, see the Allen Institute event page for NeuroDataReHack.
The final report for the 2022 NeuroDataReHack is now available on GitHub (PDF) (LaTeX).
Apply through the Allen Institute here.
Program chairs: Ben Dichter, Oliver Rübel, Satrjit Ghosh, Jerome Lecoq, and Stephanie Albin
Administrative Support:
Recordings of talks will be made available on the NWB Youtube channel.
The DANDI Archive now has 89+ neurophysiology datasets in the NWB format spanning many different species, brain areas, task types, and imaging modalities. It is now time for us to shift our focus to reanalyzing these datasets. In this workshop, we will teach attendees about the open neurophysiology datasets available on the DANDI Archive and train them on how to maximally utilize the archive and the NWB standard to incorporate existing data into their scientific workflows. This is the first event of its type for NWB, so our team will also be learning about how we can facilitate data reuse in the neuroscience community.
This schedule is tentative. A more detailed schedule will be provided closer to the event.
9 - 9:30am - Data blitz (1 min presentations)
9:30 - 11am - Poster session in Gather Town
11 - 11:30am - Introduction to NWB: Scope, APIs, tools
11:30 - 12pm - Introduction to DANDI: Scope, web interface, downloading data, DANDI Hub
12 - 12:30pm - Introduction to OpenScope: Scope, available datasets, high-level tour of existing analysis notebooks
9 - 9:15am - Meet and greet
9:15 - 9:45am - Introduction to event: Goals, schedule, Kavli funding opportunities
9:45 - 10:15am - Round table discussion of project plans (2 minutes each)
10:15 - 11am - Hack and discuss
11 - 12pm - Advanced DANDI queries
12 - 1pm - Lunch
1 - 2pm - DANDI Hub: ros3, nwbwidgets, analysis, example-notebooks repo
2 - 3pm - OpenScope in-depth presentation of analysis notebooks
3 - 5pm - Hacking
Hacking all day. Breakout sessions TBD.
3 - 4pm - Final project presentations (5 minutes each)
4 - 5pm - Feedback for organizers round table discussion
For instructions on how to create a project, see here
The lists below provide an overview of specific projects for which at least one or more attendees have signed up for to contribute to. Projects are collaborative in nature. If you are attending the hackathon and are interested in participating in any of the existing projets then please contact the team listed on the project page.
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