ElectrodeTable.hpp

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#pragma once
 
#include <string>
 
#include "BaseIO.hpp"
#include "nwb/hdmf/table/DynamicTable.hpp"
#include "nwb/hdmf/table/ElementIdentifiers.hpp"
#include "nwb/hdmf/table/VectorData.hpp"
 
namespace AQNWB::NWB
{
class ElectrodeTable : public DynamicTable
{
public:
  ElectrodeTable(std::shared_ptr<BaseIO> io,
                 const std::string& description =
                     "metadata about extracellular electrodes");
 
  ~ElectrodeTable();
 
  void initialize();
 
  void finalize();
 
  void addElectrodes(std::vector<Channel> channels);
 
  inline std::string getGroupPath() const
  {
    // all channels in ChannelVector should have the same groupName
    return groupReferences[0];
  }
 
  void setGroupPath(const std::string& groupPath);
 
  std::unique_ptr<ElementIdentifiers> electrodeDataset =
      std::make_unique<ElementIdentifiers>(); 
  std::unique_ptr<VectorData> groupNamesDataset =
      std::make_unique<VectorData>(); 
  std::unique_ptr<VectorData> locationsDataset =
      std::make_unique<VectorData>(); 
  inline const static std::string electrodeTablePath =
      "/general/extracellular_ephys/electrodes/";
 
private:
  std::vector<Channel> channels;
 
  std::vector<int> electrodeNumbers;
 
  std::vector<std::string> groupNames;
 
  std::vector<std::string> locationNames;
 
  std::vector<std::string> groupReferences;
 
  std::string groupPathBase = "/general/extracellular_ephys/";
};
}  // namespace AQNWB::NWB