OpenScope Predictive Coding to NWB
Jerome Lecoq Hannah Choi Marina Garrett David Wyrick
The goal of this project is to convert datasets collected at the Allen Institute, as part of the OpenScope Predictive Coding project into NWB files. Ultimately we will upload those datasets to Dandihub and check compatibility with scientific analysis code.
Thanks to the workshop and the technical support it provided, we managed to create all NWB files associated with the project. A key effort was associated with creating the appropriate stimulus table and trial structure. We were glad to see that our code base used in past conversion was able to scale to new experiments (Objective A and B). We are currently testing our files for data analysis so as to share supporting scientifc notebooks to work directly from NWB files (Objective C).
on the OpenScope project : https://www.geekwire.com/2018/openscope-gives-neuroscientists-time-allen-institutes-telescope-brain/