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NWB Workshops and Hackathons

Data Conversion to Matlab and Python - integrate software tools for simulation and analysis

Key Investigators

Valérie Crépel Thoams Marissal Lucas Goirand-Lopez (worshop participant)

affiliation of all : Inmed UMR1249 - Parc scientifique de Luminy 163 avenue de Luminy BP13 - 13273 Marseille

Project Description

For my PhD UI study the network organisation of both human and mice dentate gyrus. I analysed calcium imaging with clustering methods and I simulate mice dentategyrus with NEURON software. The analysis of calcium imaging is a non trivial problem and I want to better understand CaIman and add machine learning methods to the software. Then be abmle to better share it. The simutaion work is just a begenning for the moment but I want to be able to share it and to improve the simulation tools


1) Learn to work with NWB datas and tools because I am new on the platform. And have a lesson on how convert data to NWB standards. 2) Improve my experience on NWB software as CaIman 3) Experiment how NWB could help me to improve my researches and to better share results.

Approach and Plan

Progress and Next Steps


Background and References