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Gallery Of Examples

Forum

Key Investigators

• Andrew Tritt (Berkeley Lab)
• Oliver Ruebel (Berkeley Lab)
• Jean-Christophe Fillion-Robin (Kitware)
• Thomas Braun (byte physics)

Project Description

We will improve pynwb readthedocs documentation to include a curated list of examples.

Objective

1. Create a curated and beginer friendly list of examples for using pynwb

Approach and Plan

1. Identify suitable format for creating examples
2. Create few examples with corresponding tests
3. Add guidelines to create new examples

Progress and Next Steps

• Add Sphinx Gallery support to PyNWB docs and convert examples: https://github.com/NeurodataWithoutBorders/pynwb/pull/411
• Add Intracellular ephys examples: https://github.com/NeurodataWithoutBorders/pynwb/pull/428, https://github.com/NeurodataWithoutBorders/pynwb/pull/432
• Default to UTC timestamps: https://github.com/NeurodataWithoutBorders/pynwb/pull/426
• Use NaN as default resolution for TimeSeries objects: https://github.com/NeurodataWithoutBorders/pynwb/pull/417
• Fix typo in schema: https://github.com/NeurodataWithoutBorders/nwb-schema/pull/138
• Investigate scope of porting to NWB v2: https://github.com/AllenInstitute/IPNWB/issues/5

Illustrations

Background and References

• Previous discussion:
  • https://github.com/NeurodataWithoutBorders/pynwb/pull/257#issuecomment-345120218